PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00850.20
Common NameJCGZ_16760, LOC105628702
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 731aa    MW: 79177.4 Da    PI: 6.505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00850.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07309329526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  Jcr4S00850.20 309 PCPDFRK-GACRRGDMCEYAHG 329
                    8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.84E-196137IPR020683Ankyrin repeat-containing domain
CDDcd002046.41E-169135No hitNo description
Gene3DG3DSA:1.25.40.204.6E-189135IPR020683Ankyrin repeat-containing domain
SMARTSM002482501040IPR002110Ankyrin repeat
PfamPF127965.5E-1118124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.50257133IPR020683Ankyrin repeat-containing domain
SMARTSM002488.3E-45787IPR002110Ankyrin repeat
PROSITE profilePS5008811.70192127IPR002110Ankyrin repeat
SMARTSM002485.1E-492124IPR002110Ankyrin repeat
SMARTSM003564.0E-6304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309331IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4337367IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.033339363IPR000571Zinc finger, CCCH-type
SMARTSM0035621339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MNHLTVETED SFSSLLEFAA NNDVEGFKHL IERDASSIDE VGYWYGRQKG SKNIVLDHRT  60
PLMVAATYGS LDVLKFILTH TDADVNLLCG MDKTTALHCA ASGGSKNAVE AVKLLLSAGA  120
DLNCLDASGY RPVDVIVVPP KLYGMRGTLK DLLSNSVSNG SLAENNCNGS VGEPNCNGSV  180
GKHTSNGSAG ECNLRVSIST SSTSSPTLSS SPENGSPPSP SVLVSSPLAS KYNDMPSSTT  240
SEKKEYPIDP SLPDIKNSIY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH  360
TPEELRPLYV STGSAVPSPR TSASAASVMD MAAALSLLPG SPSSVSAMSP SPFNQPMSPT  420
ASSISHSSLA WPQPNVPTLH LPASNLQSSR LRSSLSARDI PPEDLNLLSD FDAQQQILND  480
LTCFSQSRNN SASLNRSGRS KTLTPSNLEE LFSAEISSPR YSDQAAAVFS PTHKSAVLNQ  540
FQQQQSMLSP INTSVFSPKN VDHPLLQASF GMGSPGRMSP RSVEPISPMG SRLSAFVQRE  600
KQHQQLRSLS SRDLGSNNPA ASIVESPVNS WTKWGSPNGK LDWSINGGDE LGHLRRSSSF  660
ELGNNGEEPD LSWVQSLVKE SPPEMLKEKF GVPVSGAASS GEGLNPSSQI DSVLESWLEQ  720
MQIDQQQQLV V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065564.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A067L8950.0A0A067L895_JATCU; Uncharacterized protein
STRINGPOPTR_0001s27370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]